JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSMAF_chr8_58578508_58664853	0/0	t0008	821	3	3	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0009	821	2	2	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0010	821	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0011	821	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0012	821	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0013	821	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0014	821	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0015	821	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0016	821	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMCE1_chr16_27219994_27273772	1/1	t0001	242	225	82	36	73	6	26	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	t0002	242	108	16	14	60	6	12	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	t0003	242	1	0	0	1	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE2_chr8_125086860_125372120	1/1	t0001	445	220	72	45	76	4	21	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	t0002	445	22	17	5	0	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	t0003	445	1	0	0	0	0	1	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	t0004	445	1	1	0	0	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE3_chr15_29259989_29274822	0/1	t0001	3920	173	19	32	82	14	25	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0002	3920	59	8	12	30	4	5	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0003	3920	54	1	18	30	0	5	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0004	3920	14	0	0	14	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0005	3923	12	12	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0006	3922	7	5	2	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0007	3920	5	4	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0008	3920	4	1	3	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0009	3920	4	0	3	0	0	1	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0010	3920	4	0	4	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0011	3920	4	3	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0012	3920	4	0	1	3	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0013	3920	4	4	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0014	3920	3	0	0	3	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0015	3919	3	0	3	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0016	3920	3	0	0	0	0	3	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0017	3920	3	0	0	3	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0018	3920	3	3	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0019	3920	3	3	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0020	3920	3	3	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0021	3923	3	3	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0022	3920	2	0	0	2	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0023	3920	2	0	0	2	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0024	3920	2	2	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0025	3923	2	2	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0026	3923	2	1	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0027	3923	2	2	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0028	3923	2	2	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0029	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0030	3920	1	0	0	0	0	1	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0031	3920	1	0	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0032	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0033	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0034	3920	1	0	0	1	0	0	copy fasta	NSMCE3	chr15	29259989	29274822