JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSMCE3_chr15_29259989_29274822	0/0	t0035	3920	1	0	0	1	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0036	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0037	3920	1	0	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0038	3920	1	0	0	1	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0039	3920	1	0	0	1	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0040	3920	1	0	0	1	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0041	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0042	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0043	3920	1	0	0	1	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0044	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0045	3920	1	0	0	1	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0046	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0047	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0048	3920	1	0	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0049	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0050	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0051	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0052	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0053	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0054	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0055	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0056	3923	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	t0057	3920	1	1	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE4A_chr10_121952091_121980217	0/1	t0001	234	430	97	82	191	16	43	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	1/0	t0002	234	2	1	0	0	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	t0003	234	1	0	0	0	0	1	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	t0004	234	1	0	0	1	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMF_chr9_137442570_137464334	0/1	t0001	2057	302	49	45	162	11	34	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0002	2057	46	12	21	0	5	8	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0003	2057	12	5	4	0	0	3	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	1/0	t0004	2057	9	2	5	0	0	1	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0005	2057	8	8	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0006	2045	5	3	1	1	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0007	2057	4	4	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0008	2057	3	3	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0009	2057	3	2	1	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0010	2057	2	0	0	2	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0011	2057	2	0	0	0	2	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0012	2057	2	0	0	2	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0013	2057	1	0	1	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0014	2057	1	1	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0015	2057	1	0	1	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0016	2057	1	0	0	1	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0017	2057	1	0	0	0	0	1	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0018	2057	1	1	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0019	2057	1	0	0	0	0	1	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0020	2057	1	1	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0021	2057	1	1	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0022	2057	1	1	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0023	2057	1	0	1	0	0	0	copy fasta	NSMF	chr9	137442570	137464334