JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSMF_chr9_137442570_137464334	0/0	t0024	2057	1	0	0	1	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0025	2057	1	1	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0026	2057	1	0	0	1	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0027	2074	1	0	0	1	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	t0028	2057	1	0	0	1	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSRP1_chr17_30111816_30191475	1/1	t0001	830	151	58	27	36	10	18	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0002	830	99	13	25	38	4	19	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0003	830	19	14	5	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0004	830	4	3	1	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0005	830	3	3	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0006	830	2	0	2	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0007	830	2	2	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0008	830	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	t0009	830	1	0	0	0	0	1	copy fasta	NSRP1	chr17	30111816	30191475
NSUN2_chr5_6594239_6638044	1/1	t0001	753	340	91	53	150	12	32	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0002	753	81	3	22	43	3	10	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0003	752	9	0	6	0	1	2	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0004	753	3	3	0	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0005	753	1	0	0	0	0	1	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0006	753	1	0	1	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0007	753	1	0	0	0	0	1	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0008	753	1	0	0	1	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	t0009	753	1	1	0	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN3_chr3_94058061_94136832	0/1	t0001	5407	78	21	14	31	4	7	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0002	5411	65	0	12	37	4	12	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0003	5408	20	1	4	12	0	3	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0004	5406	19	1	4	8	2	4	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0005	5409	16	6	3	4	0	3	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0006	5407	11	7	0	2	0	2	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0007	5413	10	0	6	2	2	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0008	5411	9	7	2	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	1/0	t0009	5409	6	4	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0010	5412	5	0	0	5	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0011	5413	5	0	0	2	0	3	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0012	5407	5	2	0	2	0	1	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0013	5410	4	0	1	2	0	1	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0014	5411	4	0	1	3	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0015	5408	4	3	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0016	5407	3	2	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0017	5409	3	0	0	3	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0018	5414	3	0	2	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0019	5407	3	3	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0020	5407	3	0	0	3	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0021	5407	3	2	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0022	5406	3	0	1	1	0	1	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0023	5410	3	1	1	0	0	1	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0024	5408	3	3	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0025	5411	3	3	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0026	5409	2	2	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0027	5408	2	1	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832