JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSUN3_chr3_94058061_94136832	0/0	t0028	5406	2	0	0	2	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0029	5407	2	2	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0030	5407	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0031	5409	1	0	0	0	1	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0032	5406	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0033	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0034	5412	1	0	0	0	1	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0035	5414	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0036	5413	1	0	0	0	0	1	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0037	5410	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0038	5411	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0039	5411	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0040	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0041	5397	1	0	0	0	1	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0042	5406	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0043	5408	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0044	5406	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0045	5407	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0046	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0047	5407	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0048	5407	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0049	5407	1	0	0	0	0	1	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0050	5408	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0051	5407	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0052	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0053	5406	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0054	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0055	5409	1	0	0	1	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0056	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0057	5407	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0058	5408	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0059	5408	1	0	0	0	1	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0060	5407	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0061	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0062	5407	1	0	1	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0063	5407	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	t0064	5407	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN4_chr1_46335807_46370018	0/0	t0001	3195	92	7	22	52	7	4	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	1/1	t0002	3193	90	25	21	31	3	8	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0003	3194	53	4	3	36	0	10	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0004	3196	15	1	8	1	3	2	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0005	3194	14	3	2	9	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0006	3194	12	0	2	0	3	7	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0007	3196	10	8	2	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0008	3195	9	1	0	7	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0009	3196	8	1	1	5	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0010	3196	7	7	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0011	3194	6	0	1	5	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0012	3195	5	1	3	0	1	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0013	3196	4	4	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018