JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSUN4_chr1_46335807_46370018	0/0	t0014	3195	3	0	0	0	0	3	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0015	3197	3	3	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0016	3197	3	3	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0017	3193	3	2	1	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0018	3197	3	0	2	0	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0019	3197	3	3	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0020	3196	2	0	0	2	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0021	3195	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0022	3194	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0023	3194	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0024	3196	2	0	0	1	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0025	3195	2	0	0	2	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0026	3194	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0027	3195	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0028	3193	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0029	3194	1	0	1	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0030	3195	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0031	3195	1	0	0	0	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0032	3195	1	0	1	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0033	3194	1	0	1	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0034	3194	1	0	0	0	1	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0035	3193	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0036	3195	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0037	3195	1	0	0	0	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0038	3195	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0039	3195	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0040	3195	1	0	1	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0041	3193	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0042	3195	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0043	3194	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0044	3193	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0045	3197	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0046	3194	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0047	3194	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0048	3194	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0049	3194	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0050	3196	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0051	3194	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0052	3195	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0053	3195	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0054	3198	1	0	1	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	t0055	3197	1	0	1	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN5_chr7_73297516_73313826	1/1	t0001	936	394	73	78	185	16	40	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	t0002	936	10	9	1	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	t0003	936	9	1	0	8	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	t0004	936	4	4	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	t0005	936	1	0	1	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	t0006	936	1	1	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	t0007	936	1	0	0	1	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN6_chr10_18540561_18656587	0/1	t0001	766	114	10	21	65	4	13	copy fasta	NSUN6	chr10	18540561	18656587