JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSUN6_chr10_18540561_18656587	0/0	t0002	764	87	17	19	40	1	10	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0003	756	40	11	20	3	2	4	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0004	765	22	15	6	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0005	763	20	5	8	0	7	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0006	765	13	11	1	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0007	764	9	3	0	5	0	1	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0008	765	6	2	0	3	0	1	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	1/0	t0009	757	6	2	2	0	0	1	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0010	767	5	0	1	4	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0011	764	5	5	0	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0012	763	4	1	0	3	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0013	765	3	1	0	1	0	1	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0014	756	2	0	0	2	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0015	764	2	2	0	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0016	766	2	0	0	2	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0017	764	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0018	765	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0019	766	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0020	766	1	1	0	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0021	756	1	0	0	0	0	1	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	t0022	764	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN7_chr4_40744955_40816184	1/1	t0001	2683	194	29	27	116	1	19	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0002	2682	50	11	11	23	3	2	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0003	2687	27	1	17	1	2	6	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0004	2684	21	2	3	13	0	3	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0005	2684	12	0	3	7	0	2	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0006	2688	8	2	4	2	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0007	2684	7	2	0	5	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0008	2685	7	7	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0009	2686	6	1	3	0	2	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0010	2681	6	6	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0011	2684	4	3	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0012	2685	3	2	0	0	0	1	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0013	2683	3	0	1	0	0	2	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0014	2685	3	0	0	3	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0015	2685	3	3	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0016	2685	3	3	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0017	2687	2	1	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0018	2682	2	0	0	2	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0019	2682	2	2	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0020	2686	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0021	2689	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0022	2688	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0023	2685	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0024	2683	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0025	2685	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0026	2683	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0027	2685	1	0	0	0	0	1	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0028	2684	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0029	2683	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184