Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARPP19_chr15_52542045_52574030	0/0	t0016	5030	6	0	0	6	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0017	5031	6	1	1	4	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0018	5028	4	0	0	2	0	2	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0019	5030	4	0	0	3	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0020	5035	4	2	1	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0021	5028	3	3	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0022	5027	3	1	0	1	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0023	5029	3	0	1	0	0	2	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0024	5030	3	0	0	3	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0025	5030	2	0	1	0	1	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0026	5030	2	1	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0027	5029	2	2	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0028	5030	2	0	0	0	1	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0029	5026	2	0	0	2	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0030	5027	2	0	1	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0031	5030	2	0	0	2	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0032	5030	1	0	1	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0033	5026	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0034	5034	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0035	5026	1	0	0	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0036	5030	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0037	5030	1	1	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0038	5029	1	0	1	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0039	5030	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0040	5029	1	0	0	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0041	5030	1	0	1	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0042	5028	1	1	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0043	5030	1	1	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0044	5028	1	0	0	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0045	5027	1	1	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0046	5031	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0047	5030	1	0	0	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0048	5030	1	0	0	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0049	5028	1	1	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0050	5027	1	1	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0051	5031	1	0	1	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0052	5026	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0053	5029	1	0	1	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0054	5031	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0055	5026	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0056	5026	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0057	5026	1	0	0	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0058	5030	1	0	1	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0059	5029	1	0	0	1	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0060	5034	1	0	0	0	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0061	5036	1	1	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0062	5029	1	0	0	0	1	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP21_chr3_35634525_35799486	0/0	t0001	1615	164	63	29	45	8	19	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	t0002	1615	66	15	19	20	4	8	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	1/0	t0003	1615	28	0	6	17	0	4	copy fasta	ARPP21	chr3	35634525	35799486