JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSUN7_chr4_40744955_40816184	0/0	t0030	2689	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0031	2687	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0032	2686	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0033	2683	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0034	2683	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0035	2683	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0036	2682	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0037	2683	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0038	2683	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0039	2682	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0040	2686	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0041	2685	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0042	2683	1	0	0	0	0	1	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0043	2682	1	0	0	0	0	1	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0044	2684	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0045	2688	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0046	2686	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0047	2687	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	t0048	2689	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NT5C1A_chr1_39646229_39677107	1/0	t0001	7962	22	0	8	10	0	3	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0002	7950	21	4	0	17	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0003	7957	19	6	5	3	2	3	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0004	7963	12	0	3	8	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0005	7960	10	0	2	6	0	2	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0006	7960	9	0	0	8	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0007	7939	9	9	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0008	7956	9	0	1	8	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0009	7957	9	1	0	7	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0010	7955	8	0	2	6	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0011	7957	8	1	3	0	4	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0012	7962	7	0	1	5	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0013	7962	7	0	1	0	1	5	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0014	7969	6	0	1	4	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0015	7959	6	6	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0016	7963	5	3	2	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0017	7961	5	0	1	4	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0018	7953	5	3	2	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0019	7969	4	0	0	4	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0020	7961	4	0	1	1	0	2	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0021	7964	4	0	1	2	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0022	7959	4	0	0	3	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0023	7941	3	3	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0024	7959	3	3	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0025	7960	3	3	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0026	7960	3	0	1	0	1	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0027	7955	3	0	2	0	1	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0028	7957	3	3	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0029	7959	3	0	1	0	2	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0030	7962	2	0	0	2	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0031	7967	2	0	0	1	0	1	copy fasta	NT5C1A	chr1	39646229	39677107