JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NT5C1A_chr1_39646229_39677107	0/0	t0032	7967	2	0	0	2	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0033	7963	2	0	0	2	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0034	7957	2	0	2	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0035	7943	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0036	7956	2	0	0	0	0	2	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0037	7958	2	0	0	0	1	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0038	7958	2	0	2	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/1	t0039	7959	2	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0040	7958	2	0	0	2	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0041	7964	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0042	7950	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0043	7961	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0044	7945	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0045	7957	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0046	7953	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0047	7961	2	0	0	2	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0048	7950	2	0	2	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0049	7961	2	0	2	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0050	7950	2	0	1	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0051	7950	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0052	7951	2	2	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0053	7946	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0054	7939	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0055	7958	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0056	7960	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0057	7961	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0058	7950	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0059	7962	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0060	7964	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0061	7967	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0062	7973	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0063	7947	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0064	7962	1	0	0	0	1	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0065	7945	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0066	7964	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0067	7964	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0068	7951	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0069	7961	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0070	7958	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0071	7950	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0072	7950	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0073	7951	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0074	7959	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0075	7956	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0076	7967	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0077	7952	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0078	7957	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0079	7958	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0080	7958	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0081	7959	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107