JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NT5C1A_chr1_39646229_39677107	0/0	t0082	7958	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0083	7959	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0084	7958	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0085	7957	1	0	0	0	1	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0086	7963	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0087	7951	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0088	7942	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0089	7953	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0090	7960	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0091	7946	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0092	7962	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0093	7959	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0094	7954	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0095	7954	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0096	7955	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0097	7945	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0098	7962	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0099	7962	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0100	7960	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0101	7960	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0102	7962	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0103	7963	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0104	7950	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0105	7951	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0106	7947	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0107	7947	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0108	7959	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0109	7962	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0110	7960	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0111	7961	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0112	7949	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0113	7954	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0114	7950	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0115	7958	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0116	7958	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0117	7971	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	t0118	7928	1	1	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1B_chr2_18557871_18594569	1/0	t0001	1027	272	43	51	131	13	33	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/1	t0002	1028	78	34	16	24	2	1	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	t0003	1028	36	11	8	12	1	4	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	t0004	1027	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	t0005	1027	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	t0006	1027	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	t0007	1027	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	t0008	1027	1	0	1	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	t0009	1027	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C2_chr10_103083038_103198272	0/0	t0001	1840	94	26	17	37	3	11	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	1/1	t0002	1840	63	1	12	36	2	10	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0003	1840	62	4	9	42	0	7	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0004	1840	47	12	13	16	4	2	copy fasta	NT5C2	chr10	103083038	103198272