JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NT5C2_chr10_103083038_103198272	0/0	t0005	1840	28	13	5	7	3	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0006	1840	17	0	2	9	0	6	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0007	1840	8	0	0	8	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0008	1840	7	7	0	0	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0009	1840	3	0	0	3	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0010	1840	2	0	0	0	0	2	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0011	1840	2	0	2	0	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0012	1840	1	0	1	0	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0013	1840	1	1	0	0	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0014	1840	1	1	0	0	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0015	1840	1	1	0	0	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0016	1840	1	0	1	0	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0017	1840	1	0	0	1	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	t0018	1840	1	0	0	1	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C3A_chr7_33009130_33067776	0/1	t0001	676	260	71	47	109	10	22	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	1/0	t0002	672	63	0	13	42	3	4	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0003	670	50	8	7	22	1	12	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0004	671	10	10	0	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0005	671	5	3	2	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0006	676	3	0	0	3	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0007	676	2	0	0	2	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0008	676	1	0	0	1	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0009	676	1	1	0	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0010	672	1	0	0	1	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0011	672	1	0	0	1	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0012	670	1	1	0	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0013	676	1	0	0	1	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	t0014	672	1	0	1	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3B_chr17_41820057_41841232	1/1	t0001	506	329	77	77	129	11	33	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	t0002	506	30	0	5	17	1	7	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	t0003	506	4	4	0	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	t0004	506	4	4	0	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	t0005	506	1	1	0	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C_chr17_75125228_75136742	1/1	t0001	296	354	96	81	120	18	37	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	t0002	296	61	0	0	61	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	t0003	296	1	0	0	0	0	1	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	t0004	296	1	0	0	1	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	t0005	296	1	0	1	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5DC1_chr6_116095853_116254497	0/0	t0001	5545	87	12	11	46	3	15	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0002	5552	57	19	20	9	4	5	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/1	t0003	5560	41	6	7	27	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0004	5562	16	1	3	7	2	3	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0005	5558	10	4	2	0	1	3	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0006	5564	10	4	1	4	0	1	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0007	5562	10	8	2	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0008	5564	9	1	3	5	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0009	5566	7	7	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0010	5564	7	7	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0011	5546	4	1	2	0	0	1	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0012	5541	4	0	0	4	0	0	copy fasta	NT5DC1	chr6	116095853	116254497