JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NT5DC1_chr6_116095853_116254497	0/0	t0013	5554	4	3	1	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0014	5558	3	3	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0015	5547	2	0	1	0	0	1	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0016	5572	2	2	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0017	5550	2	1	0	0	1	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0018	5560	2	2	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0019	5552	2	0	1	0	1	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0020	5562	2	0	0	0	0	2	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0021	5546	1	0	0	0	0	1	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0022	5545	1	0	0	1	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0023	5543	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0024	5541	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0025	5574	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0026	5568	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0027	5560	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0028	5552	1	0	0	1	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0029	5562	1	0	1	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0030	5566	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0031	5562	1	0	1	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0032	5570	1	0	1	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0033	5551	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	1/0	t0034	5552	1	0	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0035	5566	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0036	5564	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0037	5552	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0038	5550	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	t0039	5552	1	0	1	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC2_chr3_52519387_52538857	1/1	t0001	204	159	47	43	55	5	7	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0002	211	143	26	20	69	9	19	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0003	197	30	0	2	28	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0004	211	13	10	2	0	0	1	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0005	218	11	1	7	1	0	2	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0006	218	10	10	0	0	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0007	204	6	1	3	0	1	1	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0008	225	6	0	1	1	0	4	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0009	197	4	0	1	1	1	1	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0010	204	2	1	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0011	225	1	0	0	0	0	1	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	t0012	204	1	0	1	0	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC3_chr12_103767310_103846234	0/0	t0001	5594	52	6	13	25	3	5	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0002	5604	33	5	1	21	0	6	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	1/0	t0003	5598	33	18	8	0	2	4	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0004	5605	24	0	2	22	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0005	5598	17	8	5	0	0	4	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0006	5599	16	0	11	5	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0007	5593	14	0	4	6	1	3	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0008	5606	14	0	9	0	2	3	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0009	5598	11	0	0	10	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0010	5601	9	0	2	7	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0011	5598	9	9	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234