JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NT5DC3_chr12_103767310_103846234	0/0	t0012	5598	8	7	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0013	5598	7	1	2	0	2	2	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0014	5601	6	4	0	0	0	2	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0015	5593	5	1	3	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0016	5598	5	4	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0017	5598	4	0	0	4	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0018	5593	4	1	3	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0019	5603	4	0	0	3	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0020	5606	4	0	0	4	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0021	5601	3	0	1	0	1	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0022	5593	3	0	1	0	2	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0023	5592	3	0	1	0	1	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0024	5594	3	0	0	3	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0025	5595	3	0	0	2	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0026	5596	3	3	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0027	5597	3	2	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0028	5600	3	0	3	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0029	5597	3	0	0	3	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0030	5594	2	0	1	0	1	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0031	5595	2	0	0	2	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0032	5594	2	2	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0033	5605	2	0	0	2	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0034	5604	2	0	0	2	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0035	5598	2	1	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0036	5598	2	2	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0037	5599	2	2	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0038	5597	2	1	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0039	5599	2	2	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0040	5597	2	0	1	0	1	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0041	5597	2	2	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0042	5598	2	2	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0043	5598	2	0	0	2	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0044	5603	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0045	5594	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/1	t0046	5594	1	0	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0047	5593	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0048	5594	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0049	5595	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0050	5595	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0051	5594	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0052	5594	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0053	5595	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0054	5597	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0055	5593	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0056	5603	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0057	5604	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0058	5604	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0059	5605	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0060	5606	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0061	5604	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234