JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NT5DC3_chr12_103767310_103846234	0/0	t0062	5600	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0063	5603	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0064	5604	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0065	5604	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0066	5604	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0067	5605	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0068	5605	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0069	5602	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0070	5607	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0071	5605	1	0	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0072	5607	1	0	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0073	5593	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0074	5594	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0075	5599	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0076	5597	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0077	5598	1	0	0	0	1	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0078	5599	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0079	5597	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0080	5599	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0081	5599	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0082	5598	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0083	5597	1	0	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0084	5597	1	0	0	0	1	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0085	5599	1	0	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0086	5599	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0087	5598	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0088	5600	1	0	1	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0089	5597	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0090	5599	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0091	5600	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0092	5598	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0093	5599	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0094	5598	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	t0095	5598	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC4_chr2_112716020_112744095	1/1	t0001	220	308	78	62	118	12	36	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	t0002	220	44	15	14	12	0	3	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	t0003	220	6	0	0	6	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	t0004	220	3	3	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	t0005	220	2	0	0	0	2	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	t0006	220	1	0	0	0	0	1	copy fasta	NT5DC4	chr2	112716020	112744095
NT5E_chr6_85445083_85500784	0/0	t0001	1838	220	58	30	104	7	21	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	1/1	t0002	1838	72	1	7	51	5	6	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0003	1833	25	12	1	11	0	1	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0004	1838	5	5	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0005	1833	3	3	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0006	1838	3	3	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0007	1838	2	0	0	2	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0008	1838	2	0	0	0	0	2	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0009	1838	2	2	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0010	1833	2	0	2	0	0	0	copy fasta	NT5E	chr6	85445083	85500784