JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NT5E_chr6_85445083_85500784	0/0	t0011	1833	2	2	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0012	1838	1	1	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0013	1838	1	0	1	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0014	1838	1	0	1	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	t0015	1833	1	1	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5M_chr17_17298373_17352663	1/1	t0001	895	324	78	70	124	10	40	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0002	895	13	4	3	0	2	4	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0003	895	2	2	0	0	0	0	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0004	895	2	2	0	0	0	0	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0005	895	2	2	0	0	0	0	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0006	895	2	0	2	0	0	0	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0007	895	1	0	1	0	0	0	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0008	895	1	1	0	0	0	0	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	t0009	895	1	1	0	0	0	0	copy fasta	NT5M	chr17	17298373	17352663
NTAN1_chr16_15032857_15061074	0/1	t0001	278	398	69	65	200	16	47	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	t0002	278	43	21	4	15	0	3	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	t0003	293	4	0	0	4	0	0	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	t0004	292	2	0	0	2	0	0	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	t0005	278	2	2	0	0	0	0	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	t0006	278	2	0	0	0	2	0	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	t0007	278	1	0	1	0	0	0	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	t0008	278	1	0	0	1	0	0	copy fasta	NTAN1	chr16	15032857	15061074
NTAQ1_chr8_123411774_123447240	1/0	t0001	902	183	46	41	62	11	22	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/1	t0002	902	170	30	32	84	2	21	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	t0003	902	6	5	1	0	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	t0004	902	3	3	0	0	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	t0005	902	1	0	0	0	0	1	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	t0006	902	1	1	0	0	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	t0007	902	1	1	0	0	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	t0008	902	1	0	0	0	1	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTF3_chr12_5427108_5500299	1/1	t0001	529	366	89	75	148	16	36	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	t0002	529	1	1	0	0	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	t0003	529	1	0	1	0	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	t0004	529	1	1	0	0	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	t0005	529	1	1	0	0	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF4_chr19_49056128_49069818	1/0	t0001	1330	320	73	55	142	10	39	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/1	t0002	1330	56	7	10	29	4	5	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	t0003	1330	7	0	7	0	0	0	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	t0004	1330	6	5	1	0	0	0	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	t0005	1330	2	2	0	0	0	0	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	t0006	1330	2	0	0	2	0	0	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	t0007	1330	1	0	0	1	0	0	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	t0008	1330	1	0	1	0	0	0	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	t0009	1330	1	1	0	0	0	0	copy fasta	NTF4	chr19	49056128	49069818
NTHL1_chr16_2034820_2052834	1/1	t0001	116	392	98	78	150	18	46	copy fasta	NTHL1	chr16	2034820	2052834
NTMT1_chr9_129621163_129641135	1/1	t0001	859	383	90	64	164	14	49	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0002	859	16	0	0	16	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0003	859	6	5	1	0	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0004	859	2	0	2	0	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0005	859	1	0	0	1	0	0	copy fasta	NTMT1	chr9	129621163	129641135