JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTMT1_chr9_129621163_129641135	0/0	t0006	859	1	0	0	1	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0007	859	1	0	0	0	0	1	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0008	859	1	1	0	0	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0009	859	1	0	0	1	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0010	859	1	1	0	0	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0011	859	1	0	0	1	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0012	859	1	0	1	0	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	t0013	859	1	1	0	0	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT2_chr1_170140959_170173866	0/0	t0001	1259	121	8	22	61	9	21	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/1	t0002	1262	93	36	20	26	4	6	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0003	1259	55	3	18	28	0	6	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0004	1258	26	17	1	3	0	5	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0005	1258	11	2	4	0	3	2	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0006	1258	8	0	4	1	0	3	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0007	1258	6	6	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0008	1261	6	5	1	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	1/0	t0009	1259	5	3	1	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0010	1258	4	4	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0011	1262	3	0	2	0	0	1	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0012	1259	2	0	2	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0013	1262	2	0	0	2	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0014	1259	2	0	2	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0015	1259	2	0	0	2	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0016	1259	2	2	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0017	1260	1	0	0	1	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0018	1259	1	0	0	1	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0019	1259	1	1	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0020	1282	1	0	0	1	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0021	1261	1	1	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0022	1263	1	0	0	1	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0023	1261	1	0	0	1	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	t0024	1259	1	0	1	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTM_chr11_131365615_132341822	0/0	t0001	1869	32	14	9	0	1	8	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0002	1869	16	4	6	1	2	3	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0003	1869	13	9	1	1	0	2	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0004	1869	6	5	1	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0005	1869	4	1	1	0	2	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0006	1869	3	0	2	0	1	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0007	1869	3	3	0	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0008	1870	2	1	1	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0009	1869	2	2	0	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0010	1868	1	1	0	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0011	1869	1	1	0	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0012	1868	1	0	1	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0013	1868	1	1	0	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	t0014	1868	1	0	0	0	0	1	copy fasta	NTM	chr11	131365615	132341822
NTN1_chr17_9016510_9249000	0/0	t0001	4177	85	20	33	15	3	14	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0002	4166	41	15	6	16	1	3	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/1	t0003	4160	21	5	1	9	2	3	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0004	4157	11	11	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000