JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTN1_chr17_9016510_9249000	1/0	t0005	4172	7	0	0	0	1	5	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0006	4178	5	1	0	0	0	4	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0007	4160	5	0	3	0	1	1	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0008	4177	5	1	2	0	2	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0009	4177	4	0	4	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0010	4167	3	0	0	3	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0011	4166	3	0	0	3	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0012	4167	3	2	0	1	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0013	4172	3	3	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0014	4168	3	3	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0015	4177	3	0	0	2	0	1	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0016	4160	3	0	3	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0017	4167	2	2	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0018	4166	2	1	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0019	4177	2	2	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0020	4172	2	0	1	1	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0021	4172	2	2	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0022	4168	2	2	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0023	4166	2	2	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0024	4178	2	1	0	0	0	1	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0025	4178	2	2	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0026	4166	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0027	4177	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0028	4161	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0029	4166	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0030	4177	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0031	4172	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0032	4177	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0033	4177	1	0	0	0	0	1	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0034	4166	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0035	4145	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0036	4166	1	0	0	0	0	1	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0037	4171	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0038	4166	1	0	0	1	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0039	4168	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0040	4172	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0041	4173	1	0	0	0	0	1	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0042	4178	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0043	4177	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0044	4177	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0045	4177	1	0	0	0	0	1	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0046	4166	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0047	4166	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0048	4166	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0049	4172	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0050	4177	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0051	4160	1	0	0	1	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0052	4160	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0053	4161	1	0	0	1	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0054	4165	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000