Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARPP21_chr3_35634525_35799486	0/1	t0004	1615	4	1	2	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	t0005	1615	1	1	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	t0006	1615	1	0	0	0	0	1	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	t0007	1615	1	1	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	t0008	1615	1	1	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARR3_chrX_70263334_70286840	1/1	t0001	144	319	74	55	141	13	34	copy fasta	ARR3	chrX	70263334	70286840
ARRB1_chr11_75255122_75356661	0/0	t0001	6094	101	19	25	38	3	16	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	1/0	t0002	6096	40	9	5	20	2	3	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0003	6097	27	0	2	24	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0004	6092	23	14	3	3	0	3	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/1	t0005	6093	8	0	0	0	5	2	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0006	6091	6	0	5	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0007	6098	6	3	0	2	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0008	6090	6	0	3	2	1	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0009	6098	5	0	1	1	1	2	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0010	6088	5	3	1	0	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0011	6086	5	5	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0012	6097	5	0	1	4	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0013	6101	4	0	0	4	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0014	6093	4	1	0	3	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0015	6086	4	3	1	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0016	6095	3	1	0	2	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0017	6089	3	2	1	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0018	6093	3	3	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0019	6094	3	1	2	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0020	6094	3	0	0	3	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0021	6092	3	3	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0022	6092	3	0	0	0	0	3	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0023	6095	3	0	1	2	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0024	6094	2	0	0	0	1	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0025	6091	2	0	2	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0026	6095	2	2	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0027	6094	2	2	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0028	6092	2	0	2	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0029	6097	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0030	6099	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0031	6099	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0032	6097	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0033	6097	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0034	6093	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0035	6083	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0036	6094	1	0	0	0	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0037	6094	1	0	0	0	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0038	6094	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0039	6093	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0040	6095	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0041	6096	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0042	6081	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0043	6079	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0044	6082	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661