JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTN1_chr17_9016510_9249000	0/0	t0055	4166	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0056	4160	1	0	0	1	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0057	4177	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0058	4166	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0059	4166	1	0	1	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	t0060	4166	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN3_chr16_2466297_2479145	1/1	t0001	446	290	75	57	102	14	40	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	t0002	446	7	7	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	t0003	446	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	t0004	446	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	t0005	446	1	0	1	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN4_chr12_95652807_95795764	0/0	t0001	1735	84	23	23	27	2	9	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/1	t0002	1735	83	15	15	42	5	5	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	1/0	t0003	1735	43	2	6	24	2	8	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0004	1735	18	7	0	11	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0005	1735	13	5	0	8	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0006	1735	12	2	1	7	0	2	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0007	1735	9	0	3	3	0	3	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0008	1735	8	0	0	7	0	1	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0009	1735	8	0	3	1	2	2	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0010	1735	8	1	3	2	1	1	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0011	1735	7	6	1	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0012	1735	7	7	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0013	1735	5	5	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0014	1735	2	1	1	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0015	1735	2	2	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0016	1735	2	0	0	2	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0017	1735	2	2	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0018	1735	2	2	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0019	1735	2	0	1	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0020	1735	1	0	0	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0021	1735	1	0	0	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0022	1735	1	0	0	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0023	1735	1	0	1	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0024	1745	1	1	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0025	1735	1	0	0	0	0	1	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	t0026	1735	1	1	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN5_chr19_48656407_48678017	0/1	t0001	377	245	49	38	116	10	31	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	1/0	t0002	377	166	44	36	74	2	9	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	t0003	377	1	1	0	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTNG1_chr1_107136039_107489923	0/0	t0001	4700	30	13	6	7	2	2	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0002	4699	12	1	5	2	2	2	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0003	4700	9	2	1	5	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0004	4720	7	2	1	1	0	3	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0005	4719	7	2	3	0	0	2	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0006	4713	5	2	1	0	1	1	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0007	4701	5	5	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	1/0	t0008	4711	4	3	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0009	4700	4	3	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0010	4700	3	1	0	2	0	0	copy fasta	NTNG1	chr1	107136039	107489923