JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NTNG1_chr1_107136039_107489923	0/0	t0011	4713	3	3	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0012	4711	3	3	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0013	4699	2	0	1	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0014	4700	2	2	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0015	4699	2	2	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0016	4719	2	2	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0017	4718	2	0	1	0	1	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0018	4712	2	1	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0019	4712	2	1	0	0	1	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0020	4700	2	0	2	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0021	4704	2	2	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0022	4699	2	1	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0023	4721	1	0	0	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0024	4699	1	0	0	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0025	4712	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0026	4705	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0027	4718	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0028	4711	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0029	4705	1	0	0	0	1	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0030	4699	1	0	0	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0031	4705	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0032	4712	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0033	4711	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0034	4705	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0035	4701	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0036	4704	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0037	4700	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0038	4721	1	0	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0039	4720	1	0	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0040	4721	1	0	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0041	4720	1	0	0	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0042	4720	1	0	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0043	4719	1	0	0	0	1	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0044	4719	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0045	4719	1	0	0	0	1	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0046	4718	1	0	0	0	1	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0047	4718	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0048	4705	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0049	4704	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0050	4699	1	0	0	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0051	4700	1	0	0	1	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0052	4700	1	0	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0053	4705	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0054	4719	1	0	1	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0055	4711	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0056	4704	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0057	4701	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/1	t0058	4700	1	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0059	4700	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	t0060	4700	1	1	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923