JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTNG2_chr9_132157058_132249526	1/0	t0001	3081	125	18	35	52	5	14	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0002	3079	86	20	15	40	1	10	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/1	t0003	3081	34	5	3	16	3	6	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0004	3080	16	14	2	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0005	3081	11	9	2	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0006	3081	8	2	0	5	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0007	3079	6	0	0	5	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0008	3082	6	0	2	3	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0009	3081	5	0	1	1	2	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0010	3079	4	0	0	4	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0011	3080	4	1	0	3	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0012	3081	4	4	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0013	3082	3	3	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0014	3090	3	0	0	0	2	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0015	3081	2	0	0	2	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0016	3082	2	2	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0017	3082	2	0	0	2	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0018	3079	2	0	2	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0019	3079	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0020	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0021	3080	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0022	3082	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0023	3080	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0024	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0025	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0026	3082	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0027	3081	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0028	3082	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0029	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0030	3079	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0031	3079	1	0	1	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0032	3079	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0033	3079	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0034	3079	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0035	3081	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0036	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0037	3081	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0038	3081	1	0	1	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0039	3081	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0040	3081	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0041	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0042	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0043	3081	1	0	1	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0044	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0045	3080	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0046	3082	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0047	3082	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0048	3079	1	0	1	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0049	3079	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0050	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526