JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTNG2_chr9_132157058_132249526	0/0	t0051	3081	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0052	3081	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	t0053	3090	1	0	0	0	1	0	copy fasta	NTNG2	chr9	132157058	132249526
NTPCR_chr1_232945611_232988882	1/0	t0001	5752	192	43	44	74	7	23	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/1	t0002	5752	46	0	3	32	6	4	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0003	5752	25	0	6	16	1	2	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0004	5751	13	10	3	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0005	5752	10	0	0	10	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0006	5752	9	0	0	9	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0007	5747	6	5	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0008	5752	6	1	2	1	0	2	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0009	5751	6	1	0	5	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0010	5753	6	2	0	4	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0011	5751	4	4	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0012	5753	4	0	1	2	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0013	5747	4	0	3	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0014	5752	3	0	0	3	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0015	5752	3	0	0	0	2	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0016	5752	3	0	1	0	1	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0017	5751	2	1	1	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0018	5752	2	0	0	2	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0019	5752	2	2	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0020	5753	2	0	2	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0021	5751	2	0	0	2	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0022	5752	2	2	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0023	5752	2	0	2	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0024	5751	1	1	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0025	5754	1	0	1	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0026	5751	1	1	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0027	5747	1	0	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0028	5747	1	0	1	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0029	5752	1	0	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0030	5752	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0031	5752	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0032	5752	1	0	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0033	5752	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0034	5752	1	1	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0035	5752	1	1	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0036	5752	1	0	1	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0037	5752	1	0	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0038	5753	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0039	5752	1	1	0	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0040	5752	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0041	5751	1	0	1	0	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0042	5753	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0043	5753	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0044	5752	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	t0045	5752	1	0	0	0	1	0	copy fasta	NTPCR	chr1	232945611	232988882
NTRK1_chr1_156855865_156886850	1/1	t0001	279	390	94	80	158	14	42	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	t0002	279	2	2	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850