JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NTRK2_chr9_84664729_85032054	0/0	t0001	6151	21	8	8	2	3	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0002	6150	19	9	2	6	2	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/1	t0003	6150	17	3	6	4	3	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0004	6149	12	0	1	10	1	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	1/0	t0005	6150	8	0	2	4	1	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0006	6150	7	7	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0007	6151	7	1	3	3	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0008	6150	5	5	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0009	6150	4	2	2	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0010	6151	4	1	0	3	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0011	6151	3	2	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0012	6151	3	0	1	2	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0013	6150	3	3	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0014	6150	3	0	1	2	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0015	6149	2	0	0	0	2	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0016	6151	2	2	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0017	6151	2	2	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0018	6150	2	1	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0019	6151	2	2	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0020	6150	2	2	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0021	6152	2	0	0	0	2	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0022	6149	2	0	0	1	1	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0023	6149	2	0	0	0	2	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0024	6150	1	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0025	6149	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0026	6152	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0027	6152	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0028	6150	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0029	6150	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0030	6150	1	0	0	0	1	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0031	6151	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0032	6150	1	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0033	6150	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0034	6149	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0035	6149	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0036	6149	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0037	6149	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0038	6149	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0039	6150	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0040	6149	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0041	6151	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0042	6149	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0043	6150	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0044	6149	1	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0045	6152	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0046	6150	1	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0047	6150	1	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0048	6151	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0049	6150	1	0	0	0	1	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0050	6151	1	0	0	1	0	copy fasta	NTRK2	chr9	84664729	85032054