JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTRK2_chr9_84664729_85032054	0/0	t0051	6149	1	0	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0052	6150	1	1	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0053	6150	1	1	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0054	6149	1	0	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0055	6150	1	0	0	0	0	1	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0056	6150	1	0	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0057	6149	1	0	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0058	6150	1	1	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	t0059	6149	1	1	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK3_chr15_87854751_88261739	0/0	t0001	17540	12	0	2	4	3	3	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	1/0	t0002	17499	9	4	2	0	0	2	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0003	17536	6	5	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0004	17498	5	1	2	0	0	2	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0005	17552	5	4	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0006	17542	4	4	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0007	17544	4	3	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0008	17499	3	1	0	2	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0009	17542	3	0	2	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0010	17538	3	2	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0011	17543	3	3	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0012	17543	2	0	0	2	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0013	17531	2	2	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0014	17533	2	2	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0015	17503	2	2	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0016	17498	2	0	0	0	1	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0017	17546	2	2	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0018	17540	2	2	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0019	17544	2	2	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0020	17544	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0021	17503	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0022	17536	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0023	17537	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0024	17542	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0025	17545	1	0	0	0	1	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0026	17549	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/1	t0027	17545	1	0	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0028	17542	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0029	17547	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0030	17499	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0031	17542	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0032	17544	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0033	17540	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0034	17541	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0035	17538	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0036	17498	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0037	17499	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0038	17499	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0039	17500	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0040	17497	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0041	17498	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739