JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTRK3_chr15_87854751_88261739	0/0	t0042	17497	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0043	17499	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0044	17498	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0045	17499	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0046	17503	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0047	17498	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0048	17496	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0049	17499	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0050	17498	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0051	17533	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0052	17533	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0053	17535	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0054	17546	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0055	17538	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0056	17544	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0057	17541	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0058	17538	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0059	17542	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0060	17540	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0061	17542	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0062	17545	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0063	17548	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0064	17542	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0065	17540	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0066	17540	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0067	17547	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0068	17542	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0069	17541	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0070	17534	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0071	17540	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0072	17543	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0073	17546	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0074	17553	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0075	17543	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0076	17498	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0077	17498	1	0	0	0	1	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0078	17546	1	0	0	1	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0079	17552	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	t0080	17552	1	0	1	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTSR1_chr20_62703836_62767771	0/0	t0001	2876	136	7	37	64	5	23	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0002	2881	24	18	6	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0003	2877	24	0	2	22	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0004	2877	14	10	3	0	1	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0005	2877	12	9	3	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0006	2877	10	0	4	4	0	2	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/1	t0007	2877	10	3	1	2	0	3	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0008	2877	8	5	1	0	2	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0009	2876	8	0	2	2	2	2	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0010	2877	4	2	2	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0011	2876	4	0	1	0	1	2	copy fasta	NTSR1	chr20	62703836	62767771