JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTSR1_chr20_62703836_62767771	0/0	t0012	2880	3	0	0	3	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0013	2877	3	2	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0014	2876	3	0	0	3	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0015	2877	3	2	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0016	2877	2	2	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0017	2877	2	2	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0018	2878	2	1	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0019	2878	2	2	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0020	2881	2	2	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0021	2877	2	2	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0022	2864	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0023	2878	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0024	2878	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0025	2880	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0026	2881	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0027	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0028	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0029	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0030	2876	1	0	0	0	1	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0031	2881	1	0	0	1	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0032	2876	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0033	2878	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0034	2878	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0035	2881	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0036	2882	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0037	2877	1	0	0	1	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0038	2877	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0039	2878	1	0	0	1	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0040	2877	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0041	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0042	2837	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0043	2877	1	0	0	1	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	1/0	t0044	2877	1	0	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0045	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0046	2880	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0047	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0048	2880	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0049	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0050	2881	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0051	2876	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0052	2876	1	0	0	1	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0053	2876	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0054	2876	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0055	2876	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0056	2877	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0057	2878	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0058	2877	1	0	0	1	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	t0059	2881	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR2_chr2_11653178_11675195	1/1	t0001	368	365	51	60	198	13	41	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	t0002	368	84	36	13	32	3	0	copy fasta	NTSR2	chr2	11653178	11675195