JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NTSR2_chr2_11653178_11675195	0/0	t0003	368	7	6	1	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	t0004	368	3	0	0	0	0	3	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	t0005	368	1	1	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTS_chr12_85869295_85887992	1/1	t0001	727	364	86	73	146	14	43	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0002	727	41	0	3	35	0	3	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0003	723	5	0	3	0	2	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0004	727	3	3	0	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0005	727	1	0	0	1	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0006	727	1	0	0	1	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0007	727	1	1	0	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0008	727	1	1	0	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0009	727	1	0	0	1	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0010	727	1	0	1	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	t0011	727	1	1	0	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NUAK1_chr12_106058345_106143954	0/0	t0001	3759	43	1	7	28	3	4	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0002	3758	39	5	2	30	0	2	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0003	3758	34	2	6	20	5	1	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0004	3758	26	0	0	25	1	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0005	3765	20	0	11	3	0	6	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	1/1	t0006	3759	18	0	5	0	4	7	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0007	3766	8	0	3	1	0	4	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0008	3759	8	1	0	7	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0009	3760	5	5	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0010	3764	5	5	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0011	3764	5	4	1	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0012	3757	5	5	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0013	3755	5	4	1	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0014	3756	5	1	0	0	0	4	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0015	3759	5	0	0	3	0	2	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0016	3760	5	0	1	0	0	4	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0017	3765	4	4	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0018	3757	4	4	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0019	3758	4	4	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0020	3757	4	4	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0021	3758	4	0	0	3	0	1	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0022	3759	4	1	2	0	1	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0023	3765	4	3	1	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0024	3765	3	3	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0025	3756	3	3	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0026	3759	3	0	0	0	0	3	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0027	3765	2	1	1	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0028	3765	2	2	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0029	3766	2	2	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0030	3765	2	2	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0031	3765	2	2	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0032	3765	2	0	0	0	0	2	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0033	3757	2	2	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0034	3759	2	0	0	2	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0035	3760	2	0	0	2	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0036	3759	2	0	0	2	0	0	copy fasta	NUAK1	chr12	106058345	106143954