Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARRB1_chr11_75255122_75356661	0/0	t0045	6098	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0046	6089	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0047	6094	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0048	6081	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0049	6087	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0050	6090	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0051	6094	1	0	1	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0052	6088	1	0	1	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0053	6100	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0054	6094	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0055	6084	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0056	6094	1	0	0	0	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0057	6094	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0058	6094	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0059	6094	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0060	6094	1	0	0	0	1	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0061	6091	1	0	0	0	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0062	6094	1	0	0	0	0	1	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0063	6091	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0064	6094	1	0	1	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	t0065	6088	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB2_chr17_4705632_4726497	1/1	t0001	549	420	91	70	193	14	50	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0002	549	3	2	1	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0003	549	3	0	0	3	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0004	549	1	0	1	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0005	549	1	1	0	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0006	549	1	1	0	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0007	549	1	0	0	1	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0008	549	1	1	0	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	t0009	549	1	0	0	1	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRDC1_chr9_137600686_137620360	1/1	t0001	255	320	79	64	121	14	40	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	t0002	255	9	8	0	1	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	t0003	255	4	4	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	t0004	255	4	4	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	t0005	255	1	1	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC2_chr19_18003170_18019102	1/1	t0001	1278	275	35	60	126	12	40	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0002	1278	65	29	6	26	1	3	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0003	1278	27	0	3	22	1	1	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0004	1278	24	17	3	0	2	2	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0005	1278	8	7	1	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0006	1278	5	5	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0007	1278	3	0	0	3	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0008	1278	2	0	0	0	2	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0009	1278	1	1	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0010	1278	1	0	0	1	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0011	1278	1	0	1	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0012	1278	1	1	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	t0013	1278	1	1	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC3_chr5_91363631_91388317	1/0	t0001	2995	160	19	41	75	8	16	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/1	t0002	2997	131	21	12	79	1	17	copy fasta	ARRDC3	chr5	91363631	91388317