JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUAK1_chr12_106058345_106143954	0/0	t0087	3757	1	0	0	0	0	1	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0088	3758	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0089	3759	1	0	0	1	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0090	3761	1	0	1	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0091	3758	1	0	1	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	t0092	3757	1	0	0	1	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK2_chr1_205297063_205326745	1/1	t0001	1505	226	21	41	121	13	28	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0002	1505	25	12	10	0	0	3	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0003	1505	21	20	1	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0004	1505	17	13	3	0	1	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0005	1505	17	0	0	16	0	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0006	1505	11	9	2	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0007	1505	11	0	5	2	1	3	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0008	1505	6	0	4	2	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0009	1505	6	0	0	6	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0010	1505	4	1	1	0	1	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0011	1505	4	0	1	1	2	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0012	1505	3	0	0	3	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0013	1505	3	0	0	3	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0014	1505	3	3	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0015	1505	3	2	1	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0016	1505	3	1	2	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0017	1505	2	2	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0018	1505	2	2	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0019	1505	2	0	0	0	0	2	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0020	1505	2	0	1	1	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0021	1505	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0022	1505	1	0	0	1	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0023	1505	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0024	1505	1	0	0	0	0	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0025	1505	1	0	0	0	0	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0026	1505	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0027	1505	1	0	0	1	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0028	1505	1	0	0	1	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0029	1505	1	0	0	0	0	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0030	1505	1	0	0	0	0	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0031	1505	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0032	1505	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	t0033	1505	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUB1_chr7_151336812_151383449	0/1	t0001	1262	135	11	26	84	5	8	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0002	1262	103	10	31	59	2	1	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	1/0	t0003	1262	72	32	12	0	6	21	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0004	1262	59	24	6	17	1	11	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0005	1262	24	0	2	13	2	7	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0006	1262	10	10	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0007	1262	7	7	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0008	1262	2	2	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0009	1262	2	0	0	2	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0010	1262	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0011	1262	1	0	0	0	0	1	copy fasta	NUB1	chr7	151336812	151383449