JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUB1_chr7_151336812_151383449	0/0	t0012	1262	1	0	1	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	t0013	1262	1	0	0	0	0	1	copy fasta	NUB1	chr7	151336812	151383449
NUBP1_chr16_10738842_10774351	1/1	t0001	269	277	42	58	132	16	27	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	t0002	269	129	37	13	66	2	11	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	t0003	269	10	9	1	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	t0004	269	5	5	0	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	t0005	269	3	3	0	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP2_chr16_1777960_1794186	0/0	t0001	534	243	58	51	91	13	30	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	1/0	t0002	534	79	3	7	59	0	9	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/1	t0003	534	67	11	6	42	1	6	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0004	534	16	16	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0005	534	16	1	12	0	0	3	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0006	534	6	0	0	6	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0007	534	3	3	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0008	534	2	0	0	2	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0009	534	2	1	1	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0010	534	2	2	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0011	534	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0012	534	1	0	0	0	1	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0013	534	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0014	534	1	0	0	0	1	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0015	534	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	t0016	534	1	0	1	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBPL_chr14_31556404_31866224	0/0	t0001	2078	72	4	12	42	5	9	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0002	2077	54	48	5	0	1	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/1	t0003	2082	50	1	7	31	3	7	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0004	2083	13	1	4	2	0	6	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0005	2082	12	0	6	0	1	5	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0006	2078	9	7	0	0	0	2	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0007	2082	8	2	5	0	1	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0008	2078	8	7	1	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	1/0	t0009	2081	8	0	2	4	0	1	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0010	2078	5	4	1	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0011	2079	4	0	0	2	0	2	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0012	2078	4	0	2	0	1	1	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0013	2077	3	3	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0014	2079	2	2	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0015	2077	2	2	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0016	2082	2	0	0	2	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0017	2083	1	0	1	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0018	2081	1	0	1	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0019	2078	1	0	0	0	0	1	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0020	2081	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0021	2081	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0022	2081	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0023	2078	1	0	0	1	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0024	2078	1	0	0	1	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0025	2077	1	0	0	1	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0026	2082	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	t0027	2081	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224