JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUBPL_chr14_31556404_31866224	0/0	t0028	2078	1	0	1	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUCB1_chr19_48895312_48928372	0/0	t0001	1021	199	67	19	97	2	14	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/1	t0002	1021	153	8	46	64	13	21	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	1/0	t0003	1021	15	3	2	7	0	2	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0004	1021	6	6	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0005	1021	5	0	3	2	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0006	1021	4	4	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0007	1021	4	0	3	0	1	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0008	1021	2	2	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0009	1021	2	1	1	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0010	1021	2	2	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0011	1021	1	0	0	0	0	1	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0012	1021	1	1	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0013	1021	1	1	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0014	1021	1	1	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0015	1021	1	1	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	t0016	1021	1	1	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB2_chr11_17271739_17337211	0/1	t0001	1038	222	34	37	125	2	23	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	1/0	t0002	1038	128	35	30	43	6	13	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	t0003	1038	6	0	4	2	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	t0004	1038	1	0	1	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	t0005	1038	1	0	1	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	t0006	1038	1	0	1	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	t0007	1038	1	1	0	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCKS1_chr1_205707822_205755182	0/0	t0001	5668	66	6	11	44	2	3	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0002	5669	65	1	5	45	2	12	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0003	5668	40	15	6	15	0	4	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0004	5659	28	14	9	0	3	2	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0005	5669	17	6	2	7	0	2	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0006	5670	13	0	2	11	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0007	5669	10	0	0	7	0	3	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0008	5660	9	3	4	0	1	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0009	5668	8	5	3	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0010	5668	7	0	5	1	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0011	5669	4	4	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0012	5669	4	2	0	2	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0013	5668	4	0	0	3	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0014	5668	4	4	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0015	5667	4	2	2	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0016	5667	4	4	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0017	5667	3	1	0	0	1	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0018	5668	3	3	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0019	5668	3	2	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0020	5668	3	0	1	0	0	2	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0021	5669	2	0	0	2	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0022	5669	2	2	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0023	5669	2	2	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0024	5668	2	2	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0025	5667	2	2	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0026	5667	2	0	1	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182