JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUCKS1_chr1_205707822_205755182	0/0	t0027	5669	2	0	0	1	1	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0028	5668	2	0	0	0	2	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0029	5668	2	0	0	2	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0030	5668	2	1	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0031	5668	1	0	0	0	1	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0032	5668	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0033	5668	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0034	5668	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0035	5669	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0036	5670	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0037	5669	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0038	5669	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0039	5669	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0040	5669	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0041	5669	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0042	5668	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0043	5669	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0044	5669	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0045	5669	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0046	5670	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0047	5671	1	0	0	0	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0048	5669	1	0	0	0	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0049	5668	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0050	5659	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0051	5669	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0052	5667	1	0	0	0	1	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0053	5667	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0054	5668	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0055	5668	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	1/0	t0056	5668	1	0	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0057	5668	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0058	5668	1	0	0	0	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0059	5668	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0060	5668	1	0	0	0	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0061	5668	1	0	0	0	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0062	5668	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0063	5668	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/1	t0064	5668	1	0	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0065	5668	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0066	5667	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0067	5669	1	0	0	0	0	1	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0068	5669	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0069	5669	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0070	5669	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0071	5669	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0072	5669	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0073	5658	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0074	5658	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0075	5658	1	0	0	1	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0076	5660	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182