JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUCKS1_chr1_205707822_205755182	0/0	t0077	5668	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0078	5668	1	0	1	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUCKS1_chr1_205707822_205755182	0/0	t0079	5668	1	1	0	0	0	0	copy fasta	NUCKS1	chr1	205707822	205755182
NUDCD1_chr8_109235919_109339087	0/0	t0001	2171	131	17	27	67	7	13	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	1/1	t0002	2168	112	6	20	68	3	13	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0003	2172	38	14	8	9	2	5	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0004	2172	21	16	3	0	0	2	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0005	2172	12	11	1	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0006	2173	9	8	1	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0007	2173	9	9	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0008	2172	9	9	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0009	2171	6	0	0	0	1	5	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0010	2171	3	0	1	0	1	1	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0011	2168	2	0	0	2	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0012	2169	1	1	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0013	2172	1	1	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0014	2168	1	0	1	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0015	2168	1	0	1	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0016	2168	1	0	1	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0017	2171	1	0	0	0	0	1	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0018	2171	1	0	0	1	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	t0019	2171	1	0	0	1	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD2_chr5_163441526_163465102	1/1	t0001	7494	105	19	23	41	8	12	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0002	7485	98	0	10	84	1	3	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0003	7495	46	2	7	28	0	9	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0004	7496	29	1	9	11	3	5	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0005	7492	28	10	2	14	0	2	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0006	7492	27	8	9	4	1	5	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0007	7492	16	14	2	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0008	7495	7	0	0	7	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0009	7492	5	4	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0010	7492	4	2	2	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0011	7494	4	3	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0012	7495	3	2	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0013	7490	3	3	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0014	7496	3	0	2	0	0	1	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0015	7493	3	3	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0016	7495	2	2	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0017	7492	2	0	2	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0018	7486	2	0	0	2	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0019	7496	2	0	0	2	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0020	7494	2	2	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0021	7485	2	2	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0022	7485	2	0	0	2	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0023	7494	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0024	7494	1	0	0	0	1	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0025	7495	1	0	0	0	0	1	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0026	7492	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0027	7493	1	0	0	1	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0028	7492	1	0	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102