JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDCD2_chr5_163441526_163465102	0/0	t0029	7495	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0030	7492	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0031	7485	1	0	0	1	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0032	7492	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0033	7486	1	0	0	1	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0034	7494	1	0	0	1	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0035	7494	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0036	7493	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0037	7494	1	0	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0038	7494	1	0	0	0	0	1	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0039	7492	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0040	7492	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0041	7492	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0042	7485	1	0	0	0	0	1	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0043	7492	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0044	7492	1	0	0	0	0	1	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0045	7495	1	0	0	1	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0046	7495	1	0	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0047	7495	1	0	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0048	7496	1	0	1	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0049	7495	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0050	7493	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0051	7496	1	0	0	0	0	1	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0052	7493	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	t0053	7494	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD3_chr7_44374119_44495658	0/0	t0001	6951	130	34	23	49	5	19	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	1/0	t0002	6951	25	0	4	9	4	7	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0003	6952	13	2	2	8	1	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0004	6951	8	1	4	0	0	3	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0005	6951	8	0	3	0	3	2	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0006	6951	4	0	0	3	0	1	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0007	6949	3	3	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0008	6949	3	3	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/1	t0009	6951	3	0	1	0	0	1	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0010	6949	2	1	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0011	6949	2	2	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0012	6952	2	2	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0013	6951	2	2	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0014	6952	2	0	1	0	0	1	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0015	6951	2	0	2	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0016	6951	2	0	2	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0017	6951	2	2	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0018	6951	2	2	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0019	6951	2	0	0	0	1	1	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0020	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0021	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0022	6951	1	0	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0023	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0024	6951	1	0	0	0	0	1	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0025	6951	1	0	0	0	0	1	copy fasta	NUDCD3	chr7	44374119	44495658