JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDCD3_chr7_44374119_44495658	0/0	t0026	6951	1	0	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0027	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0028	6952	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0029	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0030	6951	1	0	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0031	6951	1	0	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0032	6951	1	0	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0033	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0034	6952	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0035	6951	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0036	6951	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0037	6951	1	0	0	0	0	1	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0038	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0039	6951	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	t0040	6951	1	1	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDC_chr1_26916743_26951871	1/1	t0001	797	204	67	48	43	11	33	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0002	797	13	10	3	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0003	797	9	2	4	0	1	2	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0004	797	9	1	3	0	4	1	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0005	797	4	0	2	0	0	2	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0006	797	3	0	1	2	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0007	797	2	2	0	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0008	797	2	0	2	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0009	797	2	2	0	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0010	797	1	0	1	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0011	797	1	0	0	0	0	1	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0012	797	1	0	0	0	0	1	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0013	797	1	0	0	1	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0014	797	1	1	0	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	t0015	797	1	1	0	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDT10_chrX_51327822_51342525	1/1	t0001	1431	294	67	56	127	11	31	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	t0002	1431	6	6	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	t0003	1431	3	0	0	0	0	3	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	t0004	1429	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	t0005	1431	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	t0006	1431	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT11_chrX_51485011_51501592	0/1	t0001	1874	250	63	46	99	11	30	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0002	1874	5	5	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0003	1874	3	1	2	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0004	1874	3	3	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0005	1874	2	2	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0006	1874	2	0	0	2	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	1/0	t0007	1887	1	0	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0008	1874	1	1	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0009	1874	1	0	0	1	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0010	1874	1	0	0	1	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0011	1873	1	1	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0012	1873	1	0	0	0	0	1	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0013	1879	1	0	0	1	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	t0014	1875	1	0	0	1	0	0	copy fasta	NUDT11	chrX	51485011	51501592