JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT11_chrX_51485011_51501592	0/0	t0015	1874	1	0	0	0	0	1	copy fasta	NUDT11	chrX	51485011	51501592
NUDT12_chr5_103543855_103567789	1/0	t0001	2100	129	22	27	63	4	12	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0002	2100	100	17	19	42	6	16	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0003	2100	93	16	12	51	2	12	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0004	2100	35	0	0	33	0	2	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0005	2100	28	8	9	3	4	4	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/1	t0006	2100	22	12	9	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0007	2100	4	4	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0008	2100	4	4	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0009	2100	3	0	0	3	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0010	2100	3	0	0	3	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0011	2100	3	3	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0012	2100	2	2	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0013	2100	2	0	0	2	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0014	2100	2	2	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0015	2100	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0016	2100	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0017	2100	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0018	2100	1	1	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0019	2100	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0020	2100	1	1	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0021	2100	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	t0022	2100	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT13_chr10_73105455_73136823	1/1	t0001	1043	213	53	36	91	4	27	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	t0002	1043	80	7	6	58	0	9	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	t0003	1043	18	16	2	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	t0004	1040	7	5	2	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	t0005	1040	4	4	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	t0006	1043	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	t0007	1043	1	0	0	1	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT14_chr14_105167939_105186312	1/1	t0001	186	217	32	39	110	8	26	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	t0002	168	162	48	35	58	2	19	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	t0003	186	13	13	0	0	0	0	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	t0004	186	2	0	0	0	0	2	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	t0005	221	1	0	0	0	0	1	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	t0006	172	1	0	0	1	0	0	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	t0007	168	1	1	0	0	0	0	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	t0008	167	1	0	0	1	0	0	copy fasta	NUDT14	chr14	105167939	105186312
NUDT15_chr13_48032726_48052221	1/0	t0001	1444	339	79	43	168	14	34	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/1	t0002	1444	33	1	15	5	2	9	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0003	1444	21	5	4	9	1	2	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0004	1444	10	0	10	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0005	1444	4	4	0	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0006	1444	3	3	0	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0007	1444	3	0	0	3	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0008	1444	2	0	0	0	1	1	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0009	1444	2	1	1	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0010	1444	1	0	0	1	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0011	1444	1	1	0	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0012	1444	1	0	1	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221