JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT15_chr13_48032726_48052221	0/0	t0013	1444	1	0	0	0	0	1	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0014	1444	1	1	0	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0015	1444	1	1	0	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	t0016	1444	1	0	0	0	0	1	copy fasta	NUDT15	chr13	48032726	48052221
NUDT16L1_chr16_4688562_4700844	1/1	t0001	831	423	91	76	192	18	44	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0002	831	3	0	2	1	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0003	831	2	2	0	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0004	831	2	0	0	0	0	2	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0005	831	2	2	0	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0006	831	2	2	0	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0007	831	1	1	0	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0008	831	1	0	1	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0009	831	1	0	0	1	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0010	820	1	0	0	1	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0011	831	1	0	0	1	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	t0012	831	1	0	1	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16_chr3_131376774_131393830	1/1	t0001	5521	163	14	42	68	12	25	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0002	5525	86	13	6	61	2	4	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0003	5521	36	10	8	9	1	8	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0004	5526	19	0	0	18	0	1	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0005	5525	14	0	5	9	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0006	5525	11	10	1	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0007	5525	10	0	0	10	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0008	5525	7	0	0	7	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0009	5525	6	4	2	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0010	5525	6	6	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0011	5521	4	3	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0012	5525	4	3	1	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0013	5525	4	3	1	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0014	5521	4	4	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0015	5526	3	0	0	3	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0016	5518	3	0	0	0	0	3	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0017	5525	3	0	3	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0018	5508	2	0	0	2	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0019	5519	2	2	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0020	5525	2	0	0	2	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0021	5521	2	0	0	2	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0022	5525	2	2	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0023	5525	2	2	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0024	5525	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0025	5525	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0026	5521	1	0	0	0	0	1	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0027	5525	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0028	5521	1	0	0	0	0	1	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0029	5525	1	1	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0030	5519	1	1	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0031	5525	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0032	5525	1	1	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0033	5525	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0034	5525	1	1	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830