JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT16_chr3_131376774_131393830	0/0	t0035	5526	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0036	5525	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0037	5525	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0038	5525	1	0	1	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0039	5521	1	0	0	0	0	1	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0040	5521	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0041	5525	1	1	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0042	5521	1	0	1	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0043	5526	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0044	5521	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0045	5521	1	0	0	0	1	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0046	5521	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0047	5525	1	1	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	t0048	5526	1	0	1	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT17_chr1_145840630_145853954	1/1	t0001	487	247	50	48	96	17	34	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	t0002	486	131	20	20	82	1	8	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	t0003	487	22	21	1	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	t0004	487	2	2	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	t0005	486	1	1	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	t0006	480	1	0	1	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	t0007	487	1	1	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	t0008	486	1	1	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT18_chr8_22101878_22114419	0/0	t0001	542	181	25	43	90	5	18	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0002	564	138	34	18	68	3	15	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/1	t0003	564	29	6	12	1	9	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0004	564	9	8	0	0	0	1	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0005	564	8	8	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0006	542	5	0	0	0	0	5	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0007	542	5	1	0	4	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0008	564	5	4	1	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0009	586	5	5	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0010	564	2	1	1	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0011	542	2	0	0	2	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	1/0	t0012	542	2	0	1	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0013	564	2	2	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0014	564	2	0	0	2	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0015	542	1	0	0	1	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0016	542	1	0	0	0	1	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0017	542	1	1	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0018	608	1	1	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	t0019	541	1	0	0	0	0	1	copy fasta	NUDT18	chr8	22101878	22114419
NUDT19_chr19_32686821_32718792	0/0	t0001	1978	72	10	14	39	2	7	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	1/1	t0002	1976	71	11	14	26	7	11	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0003	1979	49	0	8	34	2	5	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0004	1978	31	2	2	24	1	2	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0005	1980	28	9	1	15	1	2	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0006	1977	27	1	14	11	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0007	1979	22	4	2	13	0	3	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0008	1978	15	11	0	0	0	4	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0009	1979	13	5	1	7	0	0	copy fasta	NUDT19	chr19	32686821	32718792