Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARRDC3_chr5_91363631_91388317	0/0	t0003	2996	20	7	0	13	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0004	2997	15	0	0	5	2	8	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0005	2996	11	11	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0006	2999	11	0	2	9	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0007	2998	10	6	1	3	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0008	2994	8	1	2	4	1	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0009	2995	5	0	4	0	1	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0010	2996	4	4	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0011	2997	4	4	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0012	2995	2	0	0	0	2	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0013	2995	2	0	1	0	1	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0014	2996	2	2	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0015	3007	2	2	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0016	2995	1	0	0	1	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0017	2995	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0018	2995	1	0	1	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0019	2995	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0020	2995	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0021	2995	1	0	1	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0022	2995	1	0	1	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0023	2996	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0024	2997	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0025	2997	1	0	0	0	0	1	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0026	2997	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0027	2997	1	0	0	1	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0028	2997	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0029	2997	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	t0030	2995	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC4_chr15_97955703_97978833	0/1	t0001	2811	165	9	29	101	4	21	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	1/0	t0002	2806	57	6	17	18	7	8	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0003	2806	41	0	4	35	1	1	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0004	2807	34	0	5	24	1	4	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0005	2806	16	11	5	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0006	2806	13	11	2	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0007	2807	9	0	0	9	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0008	2806	8	0	4	0	1	3	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0009	2810	8	8	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0010	2806	8	8	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0011	2806	5	5	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0012	2806	4	1	3	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0013	2806	4	4	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0014	2806	3	2	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0015	2806	3	2	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0016	2806	3	3	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0017	2810	2	2	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0018	2806	2	2	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0019	2806	2	2	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0020	2806	2	2	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0021	2810	2	1	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0022	2811	2	1	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833