JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT19_chr19_32686821_32718792	0/0	t0010	1976	8	7	1	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0011	1977	7	2	1	4	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0012	1978	7	0	0	5	0	2	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0013	1981	7	5	0	2	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0014	1979	6	0	0	6	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0015	1979	6	5	0	0	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0016	1977	5	0	0	5	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0017	1920	3	3	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0018	1977	3	3	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0019	1978	3	3	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0020	1976	2	2	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0021	1979	2	0	0	2	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0022	1977	2	2	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0023	1979	1	0	0	0	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0024	1976	1	0	0	0	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0025	1976	1	0	0	0	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0026	1976	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0027	1976	1	0	0	0	1	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0028	1977	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0029	1978	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0030	1978	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0031	1978	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0032	1976	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0033	1976	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0034	1979	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0035	1980	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0036	1978	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0037	1982	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0038	1979	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	t0039	1977	1	0	0	0	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT1_chr7_2237226_2256145	1/0	t0001	188	360	90	57	169	14	29	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/1	t0002	188	45	4	19	8	2	11	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	t0003	188	4	1	0	0	0	3	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	t0004	188	2	0	1	0	0	1	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	t0005	188	1	0	1	0	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	t0006	188	1	0	0	1	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	t0007	188	1	1	0	0	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT21_chr16_56424133_56456332	0/1	t0001	3710	149	35	25	72	3	13	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0002	3710	103	33	11	45	4	10	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	1/0	t0003	3710	93	1	27	50	3	11	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0004	3712	25	1	2	15	0	7	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0005	3709	7	7	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0006	3712	7	0	0	4	0	3	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0007	3710	4	4	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0008	3710	4	0	4	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0009	3710	3	3	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0010	3712	2	2	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0011	3710	2	2	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0012	3710	2	0	0	2	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0013	3712	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332