JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT21_chr16_56424133_56456332	0/0	t0014	3709	1	1	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0015	3692	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0016	3710	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0017	3710	1	0	0	0	1	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0018	3710	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0019	3710	1	1	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0020	3710	1	1	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0021	3710	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0022	3710	1	0	0	0	1	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0023	3710	1	0	1	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0024	3710	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	t0025	3710	1	1	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT22_chr11_64221274_64235016	1/1	t0001	199	353	86	76	146	5	38	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	t0002	199	8	2	0	5	1	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	t0003	199	4	0	0	4	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	t0004	199	3	0	0	1	0	2	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	t0005	188	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	t0006	199	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT2_chr9_34324569_34348699	0/1	t0001	555	366	56	72	177	15	45	copy fasta	NUDT2	chr9	34324569	34348699
NUDT2_chr9_34324569_34348699	1/0	t0002	555	67	33	14	12	3	4	copy fasta	NUDT2	chr9	34324569	34348699
NUDT2_chr9_34324569_34348699	0/0	t0003	555	1	0	0	0	0	1	copy fasta	NUDT2	chr9	34324569	34348699
NUDT2_chr9_34324569_34348699	0/0	t0004	555	1	1	0	0	0	0	copy fasta	NUDT2	chr9	34324569	34348699
NUDT2_chr9_34324569_34348699	0/0	t0005	555	1	0	0	1	0	0	copy fasta	NUDT2	chr9	34324569	34348699
NUDT3_chr6_34274679_34397669	0/0	t0001	9378	50	5	10	31	0	4	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0002	9379	43	18	10	10	1	4	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/1	t0003	9379	33	2	9	16	1	4	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0004	9383	9	6	2	0	0	1	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0005	9379	6	0	0	6	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0006	9379	5	0	1	4	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0007	9384	4	0	1	2	0	1	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0008	9378	4	0	0	4	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0009	9380	4	3	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0010	9384	4	4	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0011	9382	3	3	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0012	9379	3	0	0	3	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0013	9382	3	3	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0014	9384	3	3	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0015	9379	3	1	1	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0016	9383	3	3	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0017	9396	2	0	0	1	0	1	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0018	9382	2	0	0	1	0	1	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0019	9380	2	1	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0020	9380	2	0	0	2	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0021	9375	2	2	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0022	9380	2	1	1	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	1/0	t0023	9382	2	0	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0024	9382	2	0	0	2	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0025	9378	2	0	0	2	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0026	9382	2	2	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0027	9382	2	0	2	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669