JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT3_chr6_34274679_34397669	0/0	t0078	9383	1	1	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0079	9380	1	0	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0080	9383	1	1	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0081	9378	1	0	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0082	9379	1	0	0	0	0	1	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0083	9381	1	1	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0084	9380	1	1	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0085	9381	1	1	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0086	9379	1	0	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0087	9378	1	0	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0088	9379	1	0	0	1	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0089	9380	1	0	1	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	t0090	9379	1	0	1	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT4B_chr1_148743774_148757415	0/0	t0001	3079	15	0	0	15	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0002	3100	15	1	1	13	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0003	3097	13	0	5	8	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0004	3097	10	0	5	5	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0005	3099	4	0	0	4	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0006	3078	3	0	0	3	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0007	3078	3	0	1	2	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0008	3101	3	0	1	2	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0009	3100	3	0	0	3	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0010	3096	3	0	1	2	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0011	3100	2	0	0	2	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0012	3100	2	0	0	2	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0013	3098	2	0	2	0	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0014	3099	2	0	0	2	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0015	3098	2	0	1	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0016	3102	2	0	0	2	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0017	3076	1	0	1	0	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0018	3077	1	0	1	0	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0019	3079	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0020	3080	1	0	0	0	0	1	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0021	3079	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0022	3078	1	1	0	0	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0023	3079	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0024	3100	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0025	3101	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0026	3097	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0027	3101	1	0	1	0	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0028	3101	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0029	3098	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0030	3101	1	0	0	0	0	1	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0031	3096	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	t0032	3097	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4_chr12_93372925_93413146	0/0	t0001	9165	23	1	8	12	1	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0002	9166	10	1	4	5	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0003	9156	10	10	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0004	9166	8	0	2	6	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0005	9167	7	3	1	3	0	0	copy fasta	NUDT4	chr12	93372925	93413146