JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT4_chr12_93372925_93413146	0/0	t0006	9170	6	0	2	0	0	4	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0007	9167	6	0	2	4	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0008	9168	5	1	3	0	1	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0009	9188	5	0	3	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0010	9170	4	0	0	4	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0011	9165	4	0	0	4	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0012	9165	3	0	0	3	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0013	9168	3	1	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0014	9167	3	0	1	0	2	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	1/0	t0015	9166	3	0	1	0	0	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0016	9168	3	0	0	3	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0017	9171	3	0	2	1	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0018	9167	3	0	1	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0019	9166	3	0	1	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0020	9166	3	0	0	3	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0021	9166	3	0	0	3	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0022	9165	3	0	2	1	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0023	9168	3	0	1	0	1	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0024	9189	3	0	1	1	0	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0025	9185	3	0	0	3	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0026	9184	3	0	0	3	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0027	9173	3	3	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0028	9170	3	3	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0029	9159	3	0	3	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0030	9169	2	2	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0031	9167	2	0	0	0	2	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0032	9166	2	0	0	1	0	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0033	9167	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0034	9165	2	0	2	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0035	9164	2	0	2	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0036	9168	2	0	1	0	1	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0037	9169	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0038	9170	2	2	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0039	9166	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0040	9167	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0041	9166	2	0	0	1	0	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0042	9168	2	0	0	1	1	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0043	9166	2	0	0	0	0	2	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0044	9167	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0045	9166	2	0	2	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0046	9195	2	0	2	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0047	9194	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0048	9187	2	0	2	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0049	9174	2	1	1	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0050	9173	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0051	9171	2	0	0	1	1	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0052	9158	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0053	9196	2	0	0	0	0	2	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0054	9174	2	0	0	2	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0055	9172	2	2	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146