JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT4_chr12_93372925_93413146	0/0	t0256	9165	1	0	0	1	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0257	9164	1	0	0	1	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0258	9192	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0259	9190	1	0	1	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0260	9189	1	0	0	0	0	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0261	9186	1	0	0	0	1	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0262	9185	1	0	0	1	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0263	9173	1	0	1	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0264	9167	1	0	0	1	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0265	9173	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0266	9169	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0267	9175	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0268	9174	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0269	9174	1	0	1	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0270	9170	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	t0271	9169	1	0	0	0	0	1	copy fasta	NUDT4	chr12	93372925	93413146
NUDT5_chr10_12160330_12200891	1/1	t0001	2536	187	42	27	91	4	21	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0002	2536	122	11	42	56	7	6	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0003	2536	36	18	1	12	0	5	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0004	2536	13	0	3	8	1	1	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0005	2536	13	0	0	13	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0006	2532	6	0	0	6	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0007	2536	2	2	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0008	2536	2	0	0	2	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0009	2536	2	2	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0010	2536	1	1	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0011	2536	1	0	0	1	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0012	2536	1	0	0	1	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0013	2536	1	0	0	0	0	1	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0014	2536	1	1	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0015	2536	1	1	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0016	2536	1	1	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0017	2536	1	1	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0018	2536	1	0	1	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0019	2536	1	1	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	t0020	2536	1	1	0	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT6_chr4_122887577_122927597	1/0	t0001	277	343	79	61	153	12	37	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/1	t0002	277	24	9	9	0	2	3	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	t0003	277	1	0	0	1	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT7_chr16_77717514_77747260	1/0	t0001	380	306	67	47	152	8	31	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/1	t0002	380	137	15	30	65	8	18	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	t0003	380	7	6	1	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	t0004	380	6	6	0	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	t0005	380	3	0	2	0	0	1	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	t0006	380	1	1	0	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	t0007	380	1	0	0	1	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	t0008	380	1	1	0	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT8_chr11_67622938_67634937	1/1	t0001	35	375	96	71	156	18	32	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	t0002	35	1	0	1	0	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT9_chr4_87417573_87464455	1/1	t0001	1768	270	41	39	148	12	28	copy fasta	NUDT9	chr4	87417573	87464455