Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARRDC4_chr15_97955703_97978833	0/0	t0023	2811	2	2	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0024	2806	2	2	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0025	2806	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0026	2806	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0027	2811	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0028	2810	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0029	2811	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0030	2811	1	0	0	0	1	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0031	2806	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0032	2806	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0033	2806	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0034	2806	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0035	2806	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0036	2806	1	0	0	0	1	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0037	2806	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0038	2806	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0039	2806	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0040	2806	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0041	2811	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0042	2811	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0043	2811	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0044	2811	1	0	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0045	2811	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0046	2811	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0047	2811	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0048	2811	1	0	0	0	0	1	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	t0049	2811	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC5_chr19_4885437_4907896	1/1	t0001	681	332	73	49	166	10	32	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	t0002	681	73	12	35	8	6	12	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	t0003	681	3	3	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	t0004	681	2	2	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	t0005	681	1	1	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	t0006	681	1	1	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARSA_chr22_50617754_50633152	0/0	t0001	2733	129	18	34	61	9	7	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0002	2733	67	14	17	36	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/1	t0003	2733	58	8	4	39	1	5	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0004	2733	42	0	2	32	1	7	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0005	2733	16	1	2	4	2	7	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	1/0	t0006	2765	14	3	7	1	2	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0007	2765	11	10	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0008	2733	10	10	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0009	2765	8	0	0	8	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0010	2733	7	3	1	1	2	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0011	2766	7	0	0	3	0	4	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0012	2765	6	5	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0013	2733	6	0	6	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0014	2733	5	0	0	5	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0015	2733	4	4	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0016	2766	4	0	0	4	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0017	2733	4	0	0	4	0	0	copy fasta	ARSA	chr22	50617754	50633152