JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUDT9_chr4_87417573_87464455	0/0	t0002	1755	71	18	8	42	1	2	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0003	1768	18	9	6	0	2	1	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0004	1755	16	15	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0005	1768	5	0	0	5	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0006	1768	4	4	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0007	1768	4	4	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0008	1755	2	2	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0009	1768	1	0	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0010	1768	1	0	0	0	1	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0011	1768	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0012	1768	1	0	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0013	1768	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0014	1768	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0015	1768	1	0	0	1	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0016	1755	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0017	1755	1	0	0	0	0	1	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0018	1755	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0019	1755	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	t0020	1768	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUF2_chr1_163316954_163360759	1/1	t0001	570	395	92	79	171	12	39	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	t0002	570	2	0	0	0	0	2	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	t0003	570	1	0	0	1	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	t0004	570	1	0	1	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	t0005	570	1	0	0	0	0	1	copy fasta	NUF2	chr1	163316954	163360759
NUFIP1_chr13_44934249_44994471	0/1	t0001	1992	152	25	32	75	2	17	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	1/0	t0002	1993	134	37	23	60	2	11	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0003	1993	22	19	3	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0004	1992	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0005	1992	1	0	0	1	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0006	1992	1	0	0	1	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0007	1992	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0008	1993	1	0	0	1	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0009	1992	1	0	0	1	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0010	1993	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	t0011	1993	1	0	0	1	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP2_chr17_29250839_29299148	1/0	t0001	8790	75	19	21	19	5	10	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0002	8787	59	1	10	41	1	6	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0003	8785	40	9	4	21	1	5	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/1	t0004	8789	32	13	13	0	0	5	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0005	8782	14	6	3	2	2	1	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0006	8788	13	0	3	7	0	3	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0007	8785	10	1	6	3	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0008	8785	9	0	0	9	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0009	8788	8	2	2	0	1	3	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0010	8785	7	0	0	7	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0011	8785	6	6	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0012	8782	5	5	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0013	8786	4	1	0	1	0	2	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0014	8787	4	4	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0015	8783	4	0	0	4	0	0	copy fasta	NUFIP2	chr17	29250839	29299148