JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUFIP2_chr17_29250839_29299148	0/0	t0066	8782	1	1	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0067	8782	1	1	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0068	8782	1	0	0	0	0	1	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0069	8782	1	0	1	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0070	8790	1	1	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0071	8789	1	0	1	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	t0072	8790	1	0	1	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUGGC_chr8_28016964_28088936	1/0	t0001	1562	124	17	17	80	3	6	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/1	t0002	1550	74	1	26	26	5	15	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0003	1562	65	9	8	37	6	5	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0004	1550	23	2	12	1	2	6	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0005	1551	13	11	0	1	1	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0006	1563	9	0	1	8	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0007	1562	8	0	0	8	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0008	1564	6	6	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0009	1563	6	0	0	2	0	4	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0010	1565	5	5	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0011	1551	4	4	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0012	1552	3	3	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0013	1551	3	3	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0014	1561	3	0	1	0	1	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0015	1552	3	3	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0016	1550	2	0	0	2	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0017	1551	2	0	0	2	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0018	1562	2	0	0	2	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0019	1561	2	1	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0020	1563	2	0	0	2	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0021	1563	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0022	1562	2	0	1	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0023	1563	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0024	1562	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0025	1562	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0026	1277	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0027	1550	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0028	1550	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0029	1550	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0030	1552	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0031	1551	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0032	1552	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0033	1562	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0034	1561	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0035	1562	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0036	1563	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0037	1562	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0038	1552	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0039	1551	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0040	1564	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0041	1562	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0042	1565	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0043	1554	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936