JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUGGC_chr8_28016964_28088936	0/0	t0044	1550	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0045	1552	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0046	1551	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0047	1551	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0048	1551	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0049	1561	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0050	1562	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0051	1551	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0052	1550	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0053	1562	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0054	1562	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0055	1564	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0056	1561	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0057	1561	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0058	1562	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0059	1562	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0060	1562	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0061	1564	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0062	1563	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0063	1554	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	t0064	1562	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUMA1_chr11_71997864_72085542	0/1	t0001	851	165	46	29	61	4	24	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	1/0	t0002	851	52	6	8	31	2	4	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0003	851	7	7	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0004	851	7	7	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0005	851	5	5	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0006	851	3	3	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0007	851	2	2	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0008	851	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0009	851	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	t0010	851	1	0	1	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMBL_chr19_40660905_40695651	0/1	t0001	1730	124	35	25	46	4	13	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	1/0	t0002	1732	115	0	24	74	3	13	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0003	1732	68	12	2	46	0	8	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0004	1731	41	9	9	18	3	2	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0005	1713	19	12	5	0	1	1	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0006	1729	8	5	1	2	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0007	1713	6	5	1	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0008	1713	6	5	0	0	0	1	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0009	1732	3	0	1	1	1	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0010	1730	3	3	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0011	1732	2	0	2	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0012	1713	2	2	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0013	1729	2	2	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0014	1732	2	0	0	2	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0015	1732	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0016	1730	1	0	0	0	0	1	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0017	1732	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0018	1732	1	0	0	0	0	1	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0019	1732	1	0	1	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651