JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUMBL_chr19_40660905_40695651	0/0	t0020	1730	1	0	1	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0021	1730	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0022	1731	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0023	1731	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0024	1730	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0025	1730	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0026	1713	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	t0027	1730	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMB_chr14_73270216_73463546	1/0	t0001	1649	130	38	22	38	4	27	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/1	t0002	1649	98	19	21	48	1	8	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0003	1649	65	17	18	17	3	10	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0004	1649	11	0	0	11	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0005	1649	10	10	0	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0006	1649	1	1	0	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0007	1649	1	0	0	0	0	1	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0008	1649	1	0	1	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0009	1649	1	1	0	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0010	1649	1	1	0	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0011	1649	1	1	0	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0012	1649	1	0	0	1	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	t0013	1649	1	0	0	1	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUP107_chr12_68681978_68750809	0/0	t0001	3436	92	14	20	46	5	7	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/1	t0002	3436	87	6	17	54	5	4	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0003	3436	67	2	4	44	2	15	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0004	3436	66	4	8	49	2	3	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0005	3436	17	14	1	0	2	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	1/0	t0006	3436	13	11	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0007	3436	11	9	2	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0008	3436	7	3	2	0	0	2	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0009	3436	6	0	5	0	0	1	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0010	3436	4	4	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0011	3436	3	0	0	3	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0012	3436	3	3	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0013	3436	3	0	0	3	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0014	3436	3	3	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0015	3436	2	2	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0016	3436	2	2	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0017	3436	1	1	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0018	3436	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0019	3436	1	0	0	0	1	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0020	3436	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0021	3436	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0022	3436	1	0	0	0	1	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0023	3436	1	1	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0024	3447	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0025	3436	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0026	3436	1	1	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0027	3436	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	t0028	3436	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP133_chr1_229435259_229513341	1/0	t0001	1738	170	39	33	67	9	21	copy fasta	NUP133	chr1	229435259	229513341