JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP133_chr1_229435259_229513341	0/1	t0002	1738	34	2	10	16	2	3	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0003	1738	18	4	13	0	0	1	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0004	1738	16	13	1	1	1	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0005	1738	13	12	1	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0006	1739	8	8	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0007	1738	4	4	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0008	1738	2	0	0	0	0	2	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0009	1738	2	1	1	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0010	1738	2	0	0	1	0	1	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0011	1738	1	0	1	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0012	1738	1	0	0	1	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0013	1738	1	1	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0014	1738	1	1	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0015	1738	1	0	0	1	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0016	1738	1	0	0	1	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	t0017	1738	1	1	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP153_chr6_17610037_17711925	1/1	t0001	1599	213	61	44	71	14	21	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0002	1599	42	8	1	31	0	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0003	1600	29	8	8	12	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0004	1600	6	3	0	3	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0005	1582	3	0	0	3	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0006	1599	3	0	0	3	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0007	1599	2	0	0	2	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0008	1599	2	0	0	2	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0009	1599	2	2	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0010	1600	2	0	0	2	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0011	1599	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0012	1600	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0013	1588	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0014	1599	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0015	1599	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0016	1599	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0017	1599	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0018	1599	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0019	1599	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0020	1599	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0021	1582	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	t0022	1599	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP155_chr5_37283137_37376106	0/1	t0001	3902	138	5	33	80	4	15	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0002	3903	15	5	2	5	2	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0003	3901	11	0	4	6	0	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0004	3895	10	9	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	1/0	t0005	3893	9	5	1	2	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0006	3899	9	0	0	3	0	6	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0007	3897	8	7	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0008	3893	8	7	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0009	3888	7	7	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0010	3903	6	0	0	6	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0011	3908	5	5	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0012	3902	4	0	0	0	3	1	copy fasta	NUP155	chr5	37283137	37376106